X-Recipient: archive-cygwin AT delorie DOT com
X-Original-To: cygwin AT cygwin DOT com
Delivered-To: cygwin AT cygwin DOT com
DMARC-Filter: OpenDMARC Filter v1.4.1 sourceware.org BEF1338582B2
Authentication-Results: sourceware.org; dmarc=none (p=none dis=none)
 header.from=SystematicSw.ab.ca
Authentication-Results: sourceware.org;
 spf=none smtp.mailfrom=systematicsw.ab.ca
X-Authority-Analysis: v=2.4 cv=a94jSGeF c=1 sm=1 tr=0 ts=632d4f6a
 a=oHm12aVswOWz6TMtn9zYKg==:117 a=oHm12aVswOWz6TMtn9zYKg==:17
 a=IkcTkHD0fZMA:10 a=w_pzkKWiAAAA:8 a=qILi8a18AAAA:8 a=_XjB_pHrAAAA:8
 a=l8xkssyJAAAA:8 a=RlaJjdqZx8-K2-yauxUA:9 a=QEXdDO2ut3YA:10 a=daI9ojH3vpgA:10
 a=sRI3_1zDfAgwuvI8zelB:22 a=afyxE7Onvs3FChIU605n:22 a=s5dVsxdzhPJ1D9j6SA8O:22
 a=UWeKsGKsP_vgW3p10h_J:22
Message-ID: <c624274a-6899-ee65-3e17-d76df955fd9a@SystematicSw.ab.ca>
Date: Fri, 23 Sep 2022 00:17:13 -0600
MIME-Version: 1.0
User-Agent: Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:91.0) Gecko/20100101
 Thunderbird/91.13.0
To: cygwin AT cygwin DOT com
References: <MN2PR01MB577431E627488003278C5F65CE4E9 AT MN2PR01MB5774 DOT prod DOT exchangelabs DOT com>
Subject: Re: Unable to use JPEG on imageJ
Content-Language: en-CA
From: Brian Inglis <Brian DOT Inglis AT SystematicSw DOT ab DOT ca>
Organization: Systematic Software
In-Reply-To: <MN2PR01MB577431E627488003278C5F65CE4E9@MN2PR01MB5774.prod.exchangelabs.com>
X-CMAE-Envelope: MS4xfNrOxiKuUeQesILXaAE/ERI61ojf1ipNuODcr2Oi3nSDoY6pHzg05ql9DhGzsIVdoEp0ZqW0YaQSjpyrZeRI1FERlgYkpAugDam8+yZ7NQi/Vb5eNqvt
 sk6wLHQtdonnIy/x5cB7WV7SO4iiTJdUBCEhA/oR7nVGYyJ0MqhRHlQ11tGoRZ+qPMhKB4COvfueBtRY64Je2HfudNWE8yKL6sw8lptmAIXl4kVa7TfxzvFh
X-Spam-Status: No, score=-1163.8 required=5.0 tests=BAYES_00, KAM_DMARC_STATUS,
 KAM_LAZY_DOMAIN_SECURITY, NICE_REPLY_A, SPF_HELO_NONE, SPF_NONE,
 TXREP autolearn=no autolearn_force=no version=3.4.6
X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on
 server2.sourceware.org
X-BeenThere: cygwin AT cygwin DOT com
X-Mailman-Version: 2.1.29
Precedence: list
List-Id: General Cygwin discussions and problem reports <cygwin.cygwin.com>
List-Unsubscribe: <https://cygwin.com/mailman/options/cygwin>,
 <mailto:cygwin-request AT cygwin DOT com?subject=unsubscribe>
List-Archive: <https://cygwin.com/pipermail/cygwin/>
List-Post: <mailto:cygwin AT cygwin DOT com>
List-Help: <mailto:cygwin-request AT cygwin DOT com?subject=help>
List-Subscribe: <https://cygwin.com/mailman/listinfo/cygwin>,
 <mailto:cygwin-request AT cygwin DOT com?subject=subscribe>
Reply-To: cygwin AT cygwin DOT com
Cc: rsbrodma AT syr DOT edu
Content-Transfer-Encoding: 7bit
Content-Type: text/plain; charset="us-ascii"; Format="flowed"
Errors-To: cygwin-bounces+archive-cygwin=delorie DOT com AT cygwin DOT com
Sender: "Cygwin" <cygwin-bounces+archive-cygwin=delorie DOT com AT cygwin DOT com>

On Thu, 22 Sep 2022 05:24:50 -0700, Rachel Samantha Brodman wrote:
> I'm trying to generate a multispectral image using the MICA toolbox 
> plug-in, and I have been receiving an error message when trying to
> use JPEG images. The error message reads "lookup thread terminated
> with code 1". This public mailing list was provided so I wanted to
> reach out.
 From previous complaints about this, the Cygwin fix is explained here:

https://cygwin.com/faq.html#faq.using.fixing-find_fast_cwd-warnings

which basically says you have really outdated software, as does:

http://www.jolyon.co.uk/myresearch/image-analysis/image-analysis-tools/

which suggests you also need to upgrade Java, and maybe also MICA 
toolbox from:

	http://www.empiricalimaging.com/download/micatoolbox/
e.g.
	http://empiricalimaging.com/downloads/micaToolbox-2.2.2.zip

as well as ImageJ and newer Java from:

	http://wsr.imagej.net/distros/win/
e.g.
	http://wsr.imagej.net/distros/win/ij153-win-java13-jre.zip

as most of the other versions are years out of date, and older Java 
versions have serious security problems, as well as older Cygwin and 
Java have issues running on recent Windows, so future support may have 
issues.

If you are running on older systems, you may have to install older 
versions to run the apps.

You may want to reach out on Jolyon's Empirical Imaging Forums in future 
as recommended for more relevant advice from the developers.

-- 
Take care. Thanks, Brian Inglis, Calgary, Alberta, Canada

-- 
Problem reports:      https://cygwin.com/problems.html
FAQ:                  https://cygwin.com/faq/
Documentation:        https://cygwin.com/docs.html
Unsubscribe info:     https://cygwin.com/ml/#unsubscribe-simple