| Index Entry | Section |
|---|
|
| ' | | |
|---|
| '#' sign | 5.2.1 General syntax |
| ';' sign | 5.2.1 General syntax |
|
| A | | |
|---|
| Analyzing results | 6.6 Analyzing results |
| Assignment | 5.2.1 General syntax |
|
| B | | |
|---|
| Beta distribution | 6.3.5 Distrib() specification |
| Bibliographic references | Bibliographic References |
| Binomial distribution | 6.3.5 Distrib() specification |
| Blank lines | 5.2.1 General syntax |
|
| C | | |
|---|
| CalcOutputs, output specification | 5.2.7 Output calculations |
| CDFNormal() function | 5.2.3 Special functions |
| Chi2 distribution | 6.3.5 Distrib() specification |
| Colon conditional assignment | 5.2.1 General syntax |
| Comments | 5.2.1 General syntax |
| Common pitfalls | 7. Common Pitfalls |
| Comparison operators | 5.2.1 General syntax |
| Conditional assignment | 5.2.1 General syntax |
| Cumulative density function, Normal | 5.2.3 Special functions |
|
| D | | |
|---|
| Data() specification | 6.4.5 Data() specification |
| DefaultSim | 2.2 Types of simulations |
| Defining models | 5. Defining Models |
| Density function, Normal | 5.2.3 Special functions |
| Derivative specification | 5.2.5 Dynamics specifications |
| Distrib() specification | 6.3.5 Distrib() specification |
| Distribution, beta | 6.3.5 Distrib() specification |
| Distribution, binomial | 6.3.5 Distrib() specification |
| Distribution, chi2 | 6.3.5 Distrib() specification |
| Distribution, exponential | 6.3.5 Distrib() specification |
| Distribution, gamma | 6.3.5 Distrib() specification |
| Distribution, inverse-gamma | 6.3.5 Distrib() specification |
| Distribution, lognormal | 6.3.5 Distrib() specification |
| Distribution, lognormal_v | 6.3.5 Distrib() specification |
| Distribution, loguniform | 6.3.5 Distrib() specification |
| Distribution, normal | 6.3.5 Distrib() specification |
| Distribution, normal_v | 6.3.5 Distrib() specification |
| Distribution, piecewise | 6.3.5 Distrib() specification |
| Distribution, Poisson | 6.3.5 Distrib() specification |
| Distribution, triangular | 6.3.5 Distrib() specification |
| Distribution, truncated lognormal | 6.3.5 Distrib() specification |
| Distribution, truncated normal | 6.3.5 Distrib() specification |
| Distribution, trunclognormal_v | 6.3.5 Distrib() specification |
| Distribution, truncnormal_v | 6.3.5 Distrib() specification |
| Distribution, uniform | 6.3.5 Distrib() specification |
| Dt() operator | 5.2.5 Dynamics specifications |
| Dynamics specifications | 5.2.5 Dynamics specifications |
|
| E | | |
|---|
| Erfc() function | 5.2.3 Special functions |
| Error function | 5.2.3 Special functions |
| Error handling | 6.7 Error Handling |
| Euler integrator | 6.3.2 Integrate() specification |
| Examples | 5. Defining Models |
| Examples | B. Examples |
| Experiment definition | 6.4.1 Experiment definition |
| Exponential distribution | 6.3.5 Distrib() specification |
|
| F | | |
|---|
| Function, CDFNormal() | 5.2.3 Special functions |
| Function, erfc() | 5.2.3 Special functions |
| Function, lnDFNormal() | 5.2.3 Special functions |
| Function, lnGamma() | 5.2.3 Special functions |
| Function, NDoses | 5.2.4 Input functions |
| Function, NormalRandom() | 5.2.3 Special functions |
| Function, PerDose() | 5.2.4 Input functions |
| Function, PerExp() | 5.2.4 Input functions |
| Function, Spikes() | 5.2.4 Input functions |
| Function, UniformRandom() | 5.2.3 Special functions |
| Functions, input | 5.2.4 Input functions |
| Functions, special | 5.2.3 Special functions |
|
| G | | |
|---|
| Gamma distribution | 6.3.5 Distrib() specification |
| Gamma function | 5.2.3 Special functions |
| Global specifications | 6.3 Global specifications |
|
| I | | |
|---|
| Input functions | 5.2.4 Input functions |
| Input variables | 5.2.2 Global parameter declarations |
| Installation | 3. Installation |
| Integrate() specification | 6.3.2 Integrate() specification |
| Integration routine, Euler | 6.3.2 Integrate() specification |
| Integration routine, Lsodes | 6.3.2 Integrate() specification |
| Integration variable | 5.2.5 Dynamics specifications |
| InvGamma distribution | 6.3.5 Distrib() specification |
|
| L | | |
|---|
| Level definition | 6.5.1 Level definition |
| License | 1. Software License |
| LnDFNormal() function | 5.2.3 Special functions |
| LnGamma() function | 5.2.3 Special functions |
| Lognormal distribution | 6.3.5 Distrib() specification |
| LogNormal_v distribution | 6.3.5 Distrib() specification |
| LogUniform distribution | 6.3.5 Distrib() specification |
| Lsodes integrator | 6.3.2 Integrate() specification |
|
| M | | |
|---|
| Major changes in versions 4.2.0 | 2.3 Major changes introduced with version 4.2.0 |
| Make | A. Using make |
| Markov-chain Monte Carlo simulations | 2.2 Types of simulations |
| Markov-chain Monte Carlo simulations | 6.3.6 MCMC() specification |
| MCMC simulations | 2.2 Types of simulations |
| MCMC() specification | 6.3.6 MCMC() specification |
| Mod syntax | 5.2 Syntax of the model description file |
| Mod usage | 5.1 Using Mod to process model description files |
| Model definition files | 5. Defining Models |
| Models | 5.2.9 Note about models |
| Monte Carlo | 2.2 Types of simulations |
| MonteCarlo() specification | 6.3.4 MonteCarlo() specification |
|
| N | | |
|---|
| NDoses() function | 5.2.4 Input functions |
| Normal cumulative density function | 5.2.3 Special functions |
| Normal density function | 5.2.3 Special functions |
| Normal distribution | 6.3.5 Distrib() specification |
| Normal_v distribution | 6.3.5 Distrib() specification |
| NormalRandom() function | 5.2.3 Special functions |
|
